Function that generates a list object used by sh.prm — make.sh.prm.object • shinyrAtlantis

Takes data from a box geometry file, a group file, and an Atlantis input parameter file and generates a list object that is the parameter to sh.prm (see Examples).

make.sh.prm.object(bgm.file, grp.file, prm.file)

Arguments

bgm.file: Box geometry model (.bgm) file used by Atlantis that defines box boundaries and depths.
grp.file: Text file (.csv) used by Atlantis containing group attributes.
prm.file: Text file (.prm) used by Atlantis containing biological parameters.

Value

R list object.

Examples

if (FALSE) {
bgm.file <- "SEAP_extended_shelf.bgm"
grp.file <- "SEAP_Groups_Aquacult.csv"
prm.file <- "SEAP_biol_pH_Aquacult.prm"
obj <- make.sh.prm.object(bgm.file, grp.file, prm.file)
sh.prm(obj)
}