6688
SVN commit message
Most of the additions are due to new harvest strategy options. Have also changed the handling fo some migration and movement related arrays. Should not change output in anyway but is a cleaner handling of memory.
Changed paths: M /Atlantis/trunk/atlantis/ConvertAtlantis/atAssesstoXML.c M /Atlantis/trunk/atlantis/ConvertAtlantis/atCreateXML.c M /Atlantis/trunk/atlantis/atSS3Link/atSS3DataGen.c M /Atlantis/trunk/atlantis/atSS3Link/atSS3LinkIO.c M /Atlantis/trunk/atlantis/atassess/atAssessTierSetup.c M /Atlantis/trunk/atlantis/atassess/atassessParamIO.c M /Atlantis/trunk/atlantis/atassess/atdatareading.c M /Atlantis/trunk/atlantis/atassess/atnetwork.c M /Atlantis/trunk/atlantis/atassess/atsurvey.c M /Atlantis/trunk/atlantis/atassess/atwriting.c M /Atlantis/trunk/atlantis/atecology/additionalTracer.c M /Atlantis/trunk/atlantis/atecology/atbiolmessage.c M /Atlantis/trunk/atlantis/atecology/atbiology.c M /Atlantis/trunk/atlantis/atecology/atbiolsetup.c M /Atlantis/trunk/atlantis/atecology/atbiophysics.c M /Atlantis/trunk/atlantis/atecology/atdiversity.c M /Atlantis/trunk/atlantis/atecology/atecology.c M /Atlantis/trunk/atlantis/atecology/atecologyts.c M /Atlantis/trunk/atlantis/atecology/atmovement.c M /Atlantis/trunk/atlantis/atecology/include/atbiology.h M /Atlantis/trunk/atlantis/atecology/include/atbiologyPrivate.h M /Atlantis/trunk/atlantis/atecology/include/atecology.h M /Atlantis/trunk/atlantis/ateconomic/ateconeffort.c M /Atlantis/trunk/atlantis/ateconomic/ateconio.c M /Atlantis/trunk/atlantis/ateconomic/ateconomicsetup.c M /Atlantis/trunk/atlantis/atharvest/atHarvest.c M /Atlantis/trunk/atlantis/atharvest/atHarvestIO.c M /Atlantis/trunk/atlantis/atharvest/atHarvestTS.c M /Atlantis/trunk/atlantis/atlantisUtil/atUtil.c M /Atlantis/trunk/atlantis/atlantisUtil/atUtilGroupIO.c M /Atlantis/trunk/atlantis/atlantisUtil/atUtilXML.c M /Atlantis/trunk/atlantis/atlantisUtil/include/atFisheryStruct.h M /Atlantis/trunk/atlantis/atlantismain/atlantismain.c M /Atlantis/trunk/atlantis/atlantismain/include/atlantisboxmodel.h M /Atlantis/trunk/atlantis/atmanage/Makefile.am M /Atlantis/trunk/atlantis/atmanage/atManageAnnual.c M /Atlantis/trunk/atlantis/atmanage/atManageIO.c M /Atlantis/trunk/atlantis/atmanage/atManageSetup.c M /Atlantis/trunk/atlantis/atmanage/atManageTier.c M /Atlantis/trunk/atlantis/atmanage/atRlinkRBC.c M /Atlantis/trunk/atlantis/atmanage/atSS3assess.c M /Atlantis/trunk/atlantis/atmanage/include/atManage.h M /Atlantis/trunk/atlantis/atphysics/atagetracerIO.c M /Atlantis/trunk/atlantis/atphysics/atdiagIO.c M /Atlantis/trunk/atlantis/atphysics/atepiIO.c M /Atlantis/trunk/atlantis/atphysics/atfishstatIO.c M /Atlantis/trunk/atlantis/atphysics/atphysIO.c M /Atlantis/trunk/atlantis/atphysics/attracerIO.c M /Atlantis/trunk/atlantis/atphysics/attransport.c
Atlantis model used: Atlantis Model for Puget Sound https://github.com/hmorzaria/psatlantismodel commit 87031b7
Atlantis revision comments
Version 6688
Date pulled: October 3, 2023
OS: Ubuntu 18.04.6 LTS
Environment: Linux
Modeler: Hem Nalini Morzaria-Luna
Notes
- Function CKsimulator is returning an error in atSS3DataGen.c commented out lines 85-89
/* if(bm->CloseKinEst->UseCloseKin && FunctGroupArray[groupIndex].isCloseKin) { GetCloseKinNum(bm, groupIndex, yearIndex); CKsimulator(bm, groupIndex, yearIndex); bm->CloseKinEst[groupIndex].nCKsampled++; } */
- Missing file atPGMSY.c
Model behavior
Code did not compile because of missing file.