6690

SVN commit message

Fixing a bunch of memory issues and adding more to MSE tiered management code

Changed paths: M /Atlantis/trunk/atlantis/PreRules.am M /Atlantis/trunk/atlantis/atSS3Link/atSS3DataGen.c M /Atlantis/trunk/atlantis/atassess/atAssessTierSetup.c M /Atlantis/trunk/atlantis/atecology/additionalTracer.c M /Atlantis/trunk/atlantis/atecology/atLandProcess.c M /Atlantis/trunk/atlantis/atecology/atannualbiology.c M /Atlantis/trunk/atlantis/atecology/atbiology.c M /Atlantis/trunk/atlantis/atecology/atbiolsetup.c M /Atlantis/trunk/atlantis/atecology/atdemography.c M /Atlantis/trunk/atlantis/atecology/atdiversity.c M /Atlantis/trunk/atlantis/atecology/atecology.c M /Atlantis/trunk/atlantis/atecology/include/atbiology.h M /Atlantis/trunk/atlantis/atecology/include/atbiologyPrivate.h M /Atlantis/trunk/atlantis/atecology/include/atecology.h M /Atlantis/trunk/atlantis/ateconomic/atEconomicAnnual.c M /Atlantis/trunk/atlantis/ateconomic/ateconomicsetup.c M /Atlantis/trunk/atlantis/atlantisUtil/atUtilGroupIO.c M /Atlantis/trunk/atlantis/atlantismain/atlantismain.c M /Atlantis/trunk/atlantis/atmanage/atCloseKin.c M /Atlantis/trunk/atlantis/atmanage/atManageAnnual.c M /Atlantis/trunk/atlantis/atmanage/atManageTier.c M /Atlantis/trunk/atlantis/atmanage/include/atManage.h M /Atlantis/trunk/atlantis/atphysics/atphysics.c M /Atlantis/trunk/atlantis/atphysics/atsourcesink.c

Atlantis model used: Atlantis Model for Puget Sound https://github.com/hmorzaria/psatlantismodel commit 87031b7

Atlantis revision comments

Version 6690

Date pulled: October 5, 2023

OS: Ubuntu 18.04.6 LTS

Environment: Linux

Modeler: Hem Nalini Morzaria-Luna

Notes

Function CKsimulator is returning an error in atSS3DataGen.c commented out lines 85-89

/* if(bm->CloseKinEst->UseCloseKin && FunctGroupArray[groupIndex].isCloseKin) { GetCloseKinNum(bm, groupIndex, yearIndex); CKsimulator(bm, groupIndex, yearIndex); bm->CloseKinEst[groupIndex].nCKsampled++; } */

Error on PreRules.am Line 43 says W#ARN += -Wno-error=implicit-function-declaration Should be: #WARN += -Wno-error=implicit-function-declaration

Model behavior

Model compiles after PreRules error is corrected. Run for 5 years