Load information for SSB and Recruits from an Atlantis model run.

Load information for SSB and Recruits from an Atlantis model run.

Usage

load_rec(yoy, ssb, prm_biol)

Arguments

yoy

Character string giving the connection of the YOY file. The filename usually contains outputYOY and ends in .txt".

ssb

Character string giving the connection of the YOY file. The filename usually contains outputSSB and ends in .txt".

prm_biol

Character string giving the connection to the biological parameterfile. The filename usually contains biol_fishing and does end in .prm.

Value

Dataframe with information about ssb in tonnes and recruits in thousands.

See also

Other load functions: load_box(), load_bps(), load_dietcheck(), load_fgs(), load_init(), load_init_age(), load_mort(), load_nc(), load_nc_physics(), load_spec_mort(), load_spec_pred_mort(), load_txt()

Examples

d <- system.file("extdata", "setas-model-new-trunk", package = "atlantistools")
yoy <- file.path(d, "outputSETASYOY.txt")
ssb <- file.path(d, "outputSETASSSB.txt")
prm_biol <- file.path(d, "VMPA_setas_biol_fishing_Trunk.prm")

load_rec(yoy, ssb, prm_biol)
#> # A tibble: 8 × 4
#>   species  time   ssb     rec
#>   <chr>   <dbl> <dbl>   <dbl>
#> 1 FPS        0     0  103637.
#> 2 FPS      365  1320.  61643.
#> 3 FPS      730   992.   2041.
#> 4 FPS     1094.  889.    799.
#> 5 FVS        0     0  330283.
#> 6 FVS      365  6010. 717322.
#> 7 FVS      730  2365.  67151.
#> 8 FVS     1094. 1748.  50751.