Load information for SSB and Recruits from an Atlantis model run.

Source: R/load-rec.R

Load information for SSB and Recruits from an Atlantis model run.

load_rec(yoy, ssb, prm_biol)

Arguments

yoy

Character string giving the connection of the YOY file. The filename usually contains outputYOY and ends in .txt".
ssb

Character string giving the connection of the YOY file. The filename usually contains outputSSB and ends in .txt".
prm_biol

Character string giving the connection to the biological parameterfile. The filename usually contains biol_fishing and does end in .prm.

Value

Dataframe with information about ssb in tonnes and recruits in thousands.

See also

Other load functions: load_box(), load_bps(), load_dietcheck(), load_fgs(), load_init_age(), load_init(), load_mort(), load_nc_physics(), load_nc(), load_spec_mort(), load_spec_pred_mort(), load_txt()

Examples

d <- system.file("extdata", "setas-model-new-trunk", package = "atlantistools")
yoy <- file.path(d, "outputSETASYOY.txt")
ssb <- file.path(d, "outputSETASSSB.txt")
prm_biol <- file.path(d, "VMPA_setas_biol_fishing_Trunk.prm")

load_rec(yoy, ssb, prm_biol)

#>   species   time       ssb         rec
#> 1     FPS    0.0    0.0000 103637.2850
#> 2     FPS  365.0 1319.6907  61643.4168
#> 3     FPS  730.0  991.9906   2040.7086
#> 4     FPS 1094.5  889.2720    799.4379
#> 5     FVS    0.0    0.0000 330282.8031
#> 6     FVS  365.0 6009.9847 717322.1254
#> 7     FVS  730.0 2365.1658  67151.2162
#> 8     FVS 1094.5 1747.8319  50751.0497