Function to load various txt files from Atlantis simulations

Source: R/load-txt.R

Function to load various txt files from Atlantis simulations

load_txt(file, id_col = "Time")

Arguments

file

Character string giving the connection of the output file. The filename usually contains output and ends in .txt".
id_col

Character strings giving the names of the columns which are not variables. Data from all other columns will be gathered with tidyr. Default is "Time".

Value

Dataframe in tidy format!

See also

Other load functions: load_box(), load_bps(), load_dietcheck(), load_fgs(), load_init_age(), load_init(), load_mort(), load_nc_physics(), load_nc(), load_rec(), load_spec_mort(), load_spec_pred_mort()

Examples

d <- system.file("extdata", "setas-model-new-becdev", package = "atlantistools")
file <- file.path(d, "outputSETASSSB.txt")
load_txt(file)

#>      time code  atoutput
#> 1     0.0  FPS 1321.0301
#> 2    73.0  FPS 1318.3256
#> 3   146.0  FPS 1313.7675
#> 4   219.0  FPS  986.0235
#> 5   292.0  FPS  984.0646
#> 6   365.0  FPS  981.5988
#> 7   438.0  FPS  978.9368
#> 8   511.0  FPS  976.3568
#> 9   584.0  FPS  871.2670
#> 10  657.0  FPS  869.8744
#> 11  730.0  FPS  868.0674
#> 12  803.0  FPS  866.1898
#> 13  876.0  FPS  864.6107
#> 14  949.0  FPS  714.8117
#> 15 1022.0  FPS  714.1764
#> 16 1094.5  FPS  713.1989
#> 17    0.0  FVS 6593.2459
#> 18   73.0  FVS 6526.7663
#> 19  146.0  FVS 4215.3417
#> 20  219.0  FVS 3295.8986
#> 21  292.0  FVS 2771.0611
#> 22  365.0  FVS 2403.8153
#> 23  438.0  FVS 2574.0711
#> 24  511.0  FVS 2259.5360
#> 25  584.0  FVS 2049.1855
#> 26  657.0  FVS 1901.9129
#> 27  730.0  FVS 1778.8524
#> 28  803.0  FVS 1697.2225
#> 29  876.0  FVS 1581.8399
#> 30  949.0  FVS 1496.7472
#> 31 1022.0  FVS 1424.4647
#> 32 1094.5  FVS 1362.7012

file <- file.path(d, "outputSETASYOY.txt")
load_txt(file)

#>      time  code     atoutput
#> 1     0.0 FPS.0 1.216909e+00
#> 2    73.0 FPS.0 1.216909e+00
#> 3   146.0 FPS.0 1.216909e+00
#> 4   219.0 FPS.0 7.238120e-01
#> 5   292.0 FPS.0 7.238120e-01
#> 6   365.0 FPS.0 7.238120e-01
#> 7   438.0 FPS.0 7.238120e-01
#> 8   511.0 FPS.0 7.238120e-01
#> 9   584.0 FPS.0 2.396000e-02
#> 10  657.0 FPS.0 2.396000e-02
#> 11  730.0 FPS.0 2.396000e-02
#> 12  803.0 FPS.0 2.396000e-02
#> 13  876.0 FPS.0 2.396000e-02
#> 14  949.0 FPS.0 9.377000e-03
#> 15 1022.0 FPS.0 9.377000e-03
#> 16 1094.5 FPS.0 9.377000e-03
#> 17    0.0 FVS.0 3.200440e+05
#> 18   73.0 FVS.0 6.948785e+05
#> 19  146.0 FVS.0 6.948785e+05
#> 20  219.0 FVS.0 6.948785e+05
#> 21  292.0 FVS.0 6.948785e+05
#> 22  365.0 FVS.0 6.948785e+05
#> 23  438.0 FVS.0 6.507030e+04
#> 24  511.0 FVS.0 6.507030e+04
#> 25  584.0 FVS.0 6.507030e+04
#> 26  657.0 FVS.0 6.507030e+04
#> 27  730.0 FVS.0 6.507030e+04
#> 28  803.0 FVS.0 5.328529e+04
#> 29  876.0 FVS.0 5.328529e+04
#> 30  949.0 FVS.0 5.328529e+04
#> 31 1022.0 FVS.0 5.328529e+04
#> 32 1094.5 FVS.0 5.328529e+04